ECGDataKit¶
A Python library for parsing, processing, and visualizing multi-format ECG files.
Parse, process and plot ECG files in Python
ECGDataKit parses 13 ECG file formats into one data model, with filters, R-peak detection, heart-rate variability and plots on top. The format is detected from the file content and leads come out in millivolts.
pip install ecgdatakit
from ecgdatakit import FileParser
from ecgdatakit.processing import diagnostic_filter, detect_r_peaks, heart_rate
from ecgdatakit.plotting import plot_12lead
# Any supported format, detected from the content
record = FileParser().parse("ecg.xml")
lead = diagnostic_filter(record.leads[1])
peaks = detect_r_peaks(lead)
print(heart_rate(lead, peaks))
plot_12lead(record)Parsing
13 ECG formats parsed into one data model, with leads in millivolts.
DocsProcessing
Filters, R-peak detection, heart-rate variability and signal quality.
DocsPlotting
12-lead grids, R-peaks, beats, spectra and ECG reports, static or interactive.
DocsAnonymization
Anonymizes ECG files in any supported format, with a catalog linking each file to its pseudonyms.
DocsSupported formats
Resting ECGs, Holter recordings and research databases. Each format is detected from the file content.
Details per format| HL7 aECG | .xml |
| GE MUSE XML | .xml |
| Philips Sierra XML | .xml |
| Mortara ELI XML | .xml |
| SCP-ECG | .scp |
| DICOM Waveform | .dcm |
| EDF / EDF+ | .edf |
| WFDB (PhysioNet) | .hea + .dat |
| MFER | .mwf |
| ISHNE Holter | .ecg |
| AliveCor Kardia | .json |
| EDAN Holter (experimental) | .arc, folder |
| XLE ECG (experimental) | .xle |
pip install ecgdatakit # parsing
pip install "ecgdatakit[processing]" # filters, peaks, HRV
pip install "ecgdatakit[plotting]" # plots
pip install "ecgdatakit[dicom]" # DICOM files
pip install "ecgdatakit[anonymize]" # anonymization
pip install "ecgdatakit[all]" # everything except torch